MIGEC analysis reportΒΆ
You can run the following command to generate
java -jar migec.jar Report [options] [output_path or .]
Command parameters set the checkout (-c
), histogram (-h
),
assemble (-a
), cdrblast (-b
) and final results (-f
) folders. Missing
results will be excluded from the report.
Warning
Works for batch analysis only.
Note
Running this command requires installing dependencies for R markdown compilation, see http://rmarkdown.rstudio.com/
Alternatively, you can install Rstudio and use this Rmd template to manually knit the report HTML.