MIGEC analysis reportΒΆ

You can run the following command to generate

java -jar migec.jar Report [options] [output_path or .]

Command parameters set the checkout (-c), histogram (-h), assemble (-a), cdrblast (-b) and final results (-f) folders. Missing results will be excluded from the report.


Works for batch analysis only.


Running this command requires installing dependencies for R markdown compilation, see http://rmarkdown.rstudio.com/

Alternatively, you can install Rstudio and use this Rmd template to manually knit the report HTML.